_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-19
 Query name: gi|1039360004|ref|XP_008418530.2| PREDICTED: selenoprotein H [Poecilia reticulata]
 Query range: 5-126  (total 126)

 Target: /data/www-rg/seblastian_results/463431148/tempfiles/temptarget.fasta
 Chromosome: OMLM01018966.1:subseq_0,62731_ Strand: -
 Positions:
 -Exon 1  30322        30452
 -Exon 2  28823        28965
 -Exon 3  28565        28668

 Redox box: YES

Query   AGRRGTKRKAE----EVQTFTEEKKEKGEEESGQNGLKVVIEHC <---Intron---> KSURVYGRNAEEVKSALLAARPGLTVVLNPEKPRRNSFEI
        /||||||||||    | /   ||||// | |||| | /|||||| <   1356bp   > |||||||||||||||||||| ||| | |||||||||||||
Target  SGRRGTKRKAEAQAGEEKPSVEEKKDRAEGESGQLGQRVVIEHC                KSURVYGRNAEEVKSALLAAVPGLAVDLNPEKPRRNSFEI
        tgccgaacagggcggggactgggaagaggggagccgcaggagct                aatcgtgcaggggatgctgggcgcgggcacgaccaaatga
        cggggcagacacacgaaacctaaaaagcagaggatgagtttaag                agggtaggacaataccttcctcgtctatacaacggagtat
        attaagacaggtggggggatgggaacaagggcaggtaggctac                tgcaagtatttgggatccgtactggtgccctgaacgcctgc
                                                                      *                                     

Query   TLLDGGKE <---Intron---> TSLWTGIKKGPPRKLKFPQPDSVVAALHEALKTE
        |||||||| <   154bp    > ||||||||||||||||||||| ||||| |||| |
Target  TLLDGGKE                TSLWTGIKKGPPRKLKFPQPDVVVAALQEALKAE
        accgggag                atctagaaagcccacatcccggggggccggcagg
        cttagga                acctgcgtaagccgatatcacatttcctaactaca
        tggtaca                aacggtaagggatcaggttatttatttgggtggtg
                                                                  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 751 ; UGA-SECIS: 988

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01018966.1:subseq_0,62731_ Strand = - Positions = 27813 - 27734
 Found by:  Infernal (score=22.82) Covels (score=30.84)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -15.76

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (({((((((........{[[{((((((((((......-..........))))))))))}]]}.......-...))))))}))
 target  GGCUUGUUGAAGCACAAUGACGAGGAGGGACCAAGGA-GAUGUUCUCAGUCUCUCUUCUGAUGAUCCAG-CUCCAACAGCUU
                          ****           ^^                        ****